Implements comprehensive group minimize/maximize functionality and migrates
to React Flow v12 (@xyflow/react) with improved edge routing.
## Group Minimize/Maximize Features:
- Minimized groups render as compact 220×80px solid rectangles
- Original dimensions preserved in metadata and restored on maximize
- Child actors hidden (not filtered) to prevent React Flow state issues
- Solid color backgrounds (transparency removed for minimized state)
- Internal edges filtered out when group is minimized
- Dimension sync before minimize ensures correct size on maximize
## Floating Edges:
- Dynamic edge routing for connections to/from minimized groups
- Edges connect to closest point on minimized group border
- Regular actors maintain fixed handle connections
- Smooth transitions when toggling group state
## React Flow v12 Migration:
- Updated package from 'reactflow' to '@xyflow/react'
- Changed imports to named imports (ReactFlow is now named)
- Updated CSS imports to '@xyflow/react/dist/style.css'
- Fixed NodeProps/EdgeProps to use full Node/Edge types
- Added Record<string, unknown> to data interfaces for v12 compatibility
- Replaced useStore(state => state.connectionNodeId) with useConnection()
- Updated nodeInternals to nodeLookup (renamed in v12)
- Fixed event handler types for v12 API changes
## Edge Label Improvements:
- Added explicit z-index (1000) to edge labels via EdgeLabelRenderer
- Labels now properly render above edge paths
## Type Safety & Code Quality:
- Removed all 'any' type assertions in useDocumentHistory
- Fixed missing React Hook dependencies
- Fixed unused variable warnings
- All ESLint checks passing (0 errors, 0 warnings)
- TypeScript compilation clean
## Bug Fixes:
- Group drag positions now properly persisted to store
- Minimized group styling (removed dotted border, padding)
- Node visibility using 'hidden' property instead of array filtering
- Dimension sync prevents actors from disappearing on maximize
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude <noreply@anthropic.com>
Extends bibliography smart import capabilities with additional citation.js plugins:
- @citation-js/plugin-pubmed: Support for PubMed IDs (PMID/PMCID)
- @citation-js/plugin-software-formats: Support for software citations (CFF, GitHub, npm, Zenodo)
Updates smart-parser.ts to recognize and validate Zenodo DOI format (10.5281/zenodo.xxxxx).
Improves input type detection for better user feedback.
Includes code formatting improvements to bibliographyStore.ts for consistency.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude <noreply@anthropic.com>
Implements complete bibliography management with citation assignment to
nodes and edges, following CSL-JSON standard.
Features:
- Bibliography store with Zustand and citation.js integration
- Smart import supporting DOI, BibTeX, PubMed ID, and URLs
- Manual entry and editing forms for references
- Citation selector with autocomplete text field interface
- History tracking for undo/redo support
- Workspace integration for import/export
- Support for multiple reference types including interview and other
- Description/notes field for additional reference information
Components:
- CitationSelector: autocomplete UI for selecting citations
- BibliographyConfigModal: main bibliography management interface
- QuickAddReferenceForm: smart import and manual entry
- EditReferenceInline: full reference editing form
- ReferenceManagementList: list view with citation counts
Integration:
- NodeEditorPanel: citation assignment to actors
- EdgeEditorPanel: citation assignment to relations
- MenuBar: bibliography menu item
- WorkspaceStore: bibliography persistence in workspace files
Technical details:
- CSL-JSON format for bibliographic data
- citation.js for parsing and formatting
- TypeScript with proper type definitions
- Debounced updates for performance
- Citation count tracking across graph elements
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude <noreply@anthropic.com>
